Scientific publications

1. D. Juretic, "A diagrammatic approach to the polaron ground-state energy". Phys. stat. sol. (b) 47, K49-51 (1971).

2. M.S. Tomas, A.A. Lukas, M. Sunjic, and D. Juretic, "Coherent surface bremsstrahlung in low-energy-electron diffraction and reflection high-energy-electron diffraction". Phys. Rev. B 9, 1489-1498 (1974).

3. D. Juretic, "Cyanide-resistant respiration of a Neurospora crassa membrane mutant". J. Bacteriol. 126, 542-543 (1976).

4. D. Juretic, "Lecithin requirement for the sporulation process in Neurospora crassa". J. Bacteriol. 130, 524-525 (1977).

5. D. Juretic, "The effect of phosphatidylcholine depletion on biochemical and physical properties of a Neurospora crassa membrane mutant". Biochim. Biophys. Acta 469, 137-150 (1977). 6. D. Juretic, C. Motolla, and D. Romeo, "The K+ requirement for phorbol 12-myristate 13-acetate stimulated O2 consumption by neutrophils". Period. biol. 83, 235-237 (1981).

7. D. Juretic and D. Kotnik-Karuza, "The fluorescent probe for the membrane potential of red blood cells". Period. biol. 83, 156-158 (1981).

8. A. Alebic-Juretic and D. Juretic, "Cooperative effects in a kinetic model of a light-driven proton pump". Period. biol. 83, 109-112 (1981).

9. D. Juretic and D. Kotnik-Karuza, "Calcium ionophore generation of membrane depolarization in human leukocytes". Period. biol. 85, 137-138 (1983).

10. D. Juretic, "The thermodynamic and kinetic limits on the process of free energy storage by photosynthetic systems". Croatica Chemica Acta 56, 383-387 (1983).

11. D. Juretic, "Efficiency of free energy transfer and entropy production in photosynthetic systems". J. theor. biol. 106, 315-327 (1984).

12. D. Juretic, M.O. Kunic, O. Nikolic and M. Mastrovic, "The fluorescent and infrared spectroscopy of oil samples after exposure to sea surface". Rocc. News 13, 9-16 (1984).

13. D. Juretic and D. Kotnik-Karuza, "Inhibition of cancer-promotor caused stimulation of human neutrophils by a proton ionophore". Period. biol. 87, 23-26 (1985).

14. D. Juretic, D. Kotnik-Karuza and A. Frkovic, "The accumulation of 3,3'- dipentyloxacarbocyanine by human cord blood leukocytes". Period. biol. 87, 375-381 (1985).

15. P. Riccio, L. Masotti, P. Cavatorta, A. De Santis, D. Juretic, A. Bubba, I. Pasquali-Ronchetti and E. Quaqliariello, "Myelin basic protein ability to organize lipid bilayers: structural transition in bilayers of lisophosphatidylcholine micelles". Biochem. Biophys. Res. Commun. 134, 313-319 (1986).

16. D. Kotnik-Karuza and D. Juretic, "Membrane potential measurements of granule-free bovine neutrophiles". Studia Biophysica 112, 105-113 (1986).

17. D. Juretic and F. Sokolic, "Membrane potential as a coupling agent for photophosphorylation by bacteriorhodopsin and ATP-ase containing artificial membrane". Croatica Chemica Acta 59, 599-615 (1986).

18. D. Juretic and H.V. Westerhoff, "Variation of efficiency with free-energy dissipation in biological energy transduction". Biophysical Chemistry 28, 21-34 (1987).

19. R.W. Williams, A. Chang, D. Juretic and S. Loughran, "Secondary structure predictions and medium range interactions". Biochim. Biophys. Acta 916, 200-204 (1987). CC

20. D. Kotnik-Karuza, G. Pifat and D. Juretic, "Tryptophan - a protein fluorescent probe in myelin-basic protein and low density lipoproteins". Jugoslav. Med. Biokem. 7, 71-80 (1988).

21. D. Juretic, R.W. Hendler and H.V. Westerhoff, "Variation of efficiency with free energy dissipation in theoretical models of oxidative phosphorylation and cytochrome oxidase". In Integration of Mitochondrial Function (Lemasters, J.J., Hackenbrock, C.R., Thurman, R.G., Westerhoff, H.W., eds.), Plenum Press New York, 205-211 (1988).

22. P. Cavatorta, L. Masotti, A.G. Szabo, D. Juretic, P. Riccio, and E. Quagliariello, "Fluorescence spectral resolution of myelin basic protein conformers in complexes with lysophosphatidylcholine", Cell Biophysics 13, 201-215 (1988).

23. D. Juretic, H.-C. Chen, J.H. Brown, J.L. Morell, R.W. Hendler and H.V. Westerhoff, "Magainin 2 amide and analogues. Antimicrobial activity, membrane depolarization and susceptibility to proteolysis", FEBS Letters 249, 219-223, (1989).

24. H.V. Westerhoff, D. Juretic, R.W. Hendler and M. Zasloff, "Magainins and the distruption of membrane-linked free-energy transduction", Proc. Natl. Acad. Sci. USA 86, 6597-6601 (1989).

25. H.V. Westerhoff, R.W. Hendler, M. Zasloff and D. Juretic, "Interactions between a new class of eukaryotic antimicrobial agents and isolated rat liver mitochondria", Biochim. Biophys. Acta 975, 361-369 (1989).

26. D. Juretic, "Antimicrobial peptides of the magainin family: membrane depolarization studies on E. coli and cytochrome oxidase liposomes", Studia Biophysica 138, 79-86 (1990).

27. D. Juretic and R.W. Williams "Protein secondary structure preferences: dependence on medium-range steric interactions" J. Math. Chem. 8, 229-242 (1991).

28. D. Juretic, "Damped oscillatory control of mitochondrial energy linked processes observed in the presence of magainins" Period. biol. 93, 277-278 (1991).

29. D. Juretic, "Localizing -helices in water-soluble and membrane-bound proteins". Period. biol. 93, 279-280 (1991).

30. D. Juretic, "Secondary structure of membrane proteins: Prediction with conformational preference functions of soluble proteins". Croatica Chemica Acta, 65, 921-932 (1992).

31. D. Juretic, "Membrane free-energy converters: The benefits of intrinsic uncoupling and nonlinearity". Acta Pharmaceutica 42 , 373-376 (1992).

32. D. Juretic, B.K. Lee, N. Trinajstic and R.W. Williams, "Conformational preference functions for predicting helices in membrane proteins". Biopolymers 33, 255-273 (1993).

33. D. Juretic, N. Trinajstic and B. Lucic, "Protein secondary structure conformations and associated hydrophobicity scales". J. Math. Chem. 14, 35-45 (1993).

34. D. Juretic, B. Lucic and N. Trinajstic, "Predicting membrane protein secondary structure. Preference functions method for finding optimal conformational preferences". Croatica Chemica Acta 66, 201-208 (1993).

35. D. Juretic, "Hydrophobicity preferences and secondary structure prediction for membrane proteins". Acta Pharmaceutica 43, 223-226 (1993).

36. D. Juretic , R. W. Hendler, F. Kamp, W. S. Caughey, M. Zasloff and H. V.Westerhoff, "Magainin oligomers reversibly dissipate membrane potential in cytochrome oxidase liposomes". Biochemistry 33, 4562-4570 (1994).

37. D. Juretic , B. Lucic and N. Trinajstic , "Secondary structure prediction quality for naturally occurring amino acids in soluble proteins". Journal of Molecular Structure (Theochem) 338, 43-50 (1995).

38. D. Juretic and R. Pesic , "A scale of á-preferences for structure-activity predictions in soluble proteins". Croatica Chemica Acta 68, 215-232 (1995).

39. H.V. Westerhoff, M. Zasloff, J.L. Rosner, R.W. Hendler, A.De Wall, A Vaz Gomez, A.P.M. Jongsma, A. Riethorst and D. Juretic, "Functional synergism of the magainins PGLa and magainin-2 in Escherichia coli, tumor cells and liposomes". Eur. J. Biochem. 228, 257-264 (1995).

40. B. Lucic , S. Nikolic , N. Trinajstic , A. Juric and D. Juretic, "A novel QSPR approach to physicochemical properties of the alpha-amino acids". Croatica Chemica Acta 68, 435-450 (1995).

41. B. Lucic , S. Nikolic , N. Trinajstic and D.Juretic , "On the selection of optimum descriptors for structure-property modeling", Journal of Chemical Information and Computer Science 35, 532-538 (1995).

42. B. Lucic, N.Trinajstic, and D. Juretic, "From protein sequence to conformation I". (in Croatian). Polimeri 17(3), 119-128 (1996).

43. B. Lucic, N. Trinajstic, and D. Juretic, '' Recognition of membrane protein structure from amino acid sequence.'' p. 117-158 in "From Chemical Topology to Three-Dimensional Geometry " (Edited by Balaban, A.T) Plenum Publishing Corporation, New York, (1997).

44. D. Juretic, B. Lucic, D. Zucic and N. Trinajstic, '' Protein transmembrane structure: recognition and prediction by using hydrophobicuty scales through preference functions.'' p. 405-445 in "Theoretical and Computational Chemistry ", Vol 5. Theoretical Organic Chemistry (Edited by Parkanyi, C.), Elsevier Science, Amsterdam, (1998).

45. D. Juretic, "Bioenergetics: Work of Membrane Proteins" (in Croatian), Informator, Zagreb (1997).

46. D. Juretic, D. Zucic, B. Lucic and N. Trinajstic, " Preference functions for prediction of membrane-buried helices in integral membrane proteins." Computers and Chemistry 22, 279-294 (1998).

47. D. Juretic and A. Lucin, " The preference functions method for predicting helical turns with membrane propensity. " Journal of Chemical Information and Computer Sciences 38, 575-585 (1998).

48. D. Juretic, A. Jeroncic and D. Zucic, "Sequence analysis of membrane proteins with the web server SPLIT". Croatica Chemica Acta 72, 975-997 (1999).

49. D. Juretic, A. Jeroncic and D. Zucic, "Prediction of initiation sites for protein folding with helix preferences". Periodicum Biologorum 101, 339-347 (1999).

50. D. Juretic, L. Zoranic and D. Zucic: "Basic charge clusters and predictions of membrane protein topology". J. Chem. Inf. Coput. Sci. 42, 620-632 (2002).

51. D.Juretic, Comment on " "Minimum entropy production in photosynthesis", BioComplexity, 2003.

52. D.Juretic and P. Zupanovic: "Photosynthetic Models with Maximum Entropy Production in Irreversible Charge Transfer Steps" , Comp. Biol. Chem. 27,541-553(2003).

53. Damir Zucic, and Davor Juretic: "Precise Annotation of Transmembrane Segments with Garlic – a Free Molecular Visualization Program" Croatica Chemica Acta77 (1–2) 397-401 (2004)

54. Pasko Zupanovic and Davor Juretic: "The Chemical Cycle Kinetics Close to the Equilibrium State and Electrical Circuit Analogy" Croatica Chemica Acta 77 (4) 561-571 (2004).

55. Pasko Zupanovic , Davor Juretic and Srecko Botric: "Kirchhoff’s loop law and the maximum entropy production principle" Physical Review E 70, 056108 (2004).

56. Davor Juretic, Bono Lucic and Nenad Trinajstic: "Why focusing on bioinformatics?" Periodicum Biologorum vol. 107, No 4, 379–383, 2005

57. D. Juretic and P. Zupanovic: “The free-energy transduction and entropy production in initial photosynthetic reactions” in Non-equilibrium Thermodynamics and the Production of Entropy, Eds. A. Kleidon i R.D. Lorenz,Springer,-Verlag, Berlin (2005); pp. 161-171.

58. Pasko Zupanovic, Davor Juretic and Srecko Botric: "On the equivalence between Onsager’s principle of the least dissipation of energy and maximum entropy production principle. Conduction of heat in an anisotropic crystal." FIZIKA A 14 1, 89–96,(2005)

59. Srećko Botrić, Paško Županović and Davor Juretić: "Is the Stationary Current Distribution in a Linear Planar Electric Network Determined by the Principle of Maximum Entropy Production" Croatica Chemica Acta 78 (2) 181-184 (2005).

60. Roderick C. Dewar, Davor Juretić and Paško Županović: “The functional design of the rotary enzyme ATP synthase is consistent with maximum entropy production” Chemical Physics Letters 430, 177-182 (2006).

61. Paško Županović, Srećko Botrić and Davor Juretić: “Relaxation Processes, MaxEnt Formalism and Einsten’s Formula for the Probability of Fluctations” Croatica Chemica Acta 79 (3), 335-338 (2006).

62. Davor Juretić, Damir Vukičević, Nada Ilić, Nikolinka Antcheva and Alessandro Tossi: “ Computational Design of Highly Selective Antimicrobial Peptides” J. Chem. Inf. Model. 49, 2873-2882 (2009).

63. Paško Županović, Milan Brumen, Marko Jagodič and Davor Juretić: “ Bacterial chemotaxis and entropy production” Philosophical Transactions of the Royal Society B 365, 1397-1403 (2010).

64. Paško Županović, Srećko Botrić, Davor Juretić and Domagoj Kuić: “ Relaxation Processes and the Maximum Entropy Production Principles” Entropy 12, 473-479 (2010).

65. Paško Županović, Domagoj Kuić, Davor Juretić and Andrej Dobovišek: “ On the Problem of Formulating Principles in Nonequilibriumk Thermodynamics” Entropy 12, 926-931 (2010).

66. Paško Županović, Domagoj Kuić, Željana Bonačić-Lošić, Dražen Petrov, Davor Juretić and Milan Brumen: “The Maximum Entropy Prtoduction Principle and Linear Irreversible Processes” Entropy 12, 996-1005 (2010).